Project

Run - SRR12647602

Project PRJNA663638
Sample SAMN16174934
Experiment SRX9128921
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,670.1 2,697.3
Mean read quality 41.7 41.5
Median read length 2,723.0 2,723.0
Median read quality 35.8 35.8
Number of reads 1,878.0 1,798.0
Read length N50 2,723.0 2,723.0
STDEV read length 276.7 83.8
Total bases 5,014,526.0 4,849,744.0
Before filtering After filtering(length/quality)
#Name SRR12647602_filt.fastq
p__Actinobacteriota 25
p__Actinobacteriota;c__Actinobacteria 25
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_longum 3
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 22
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 22
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 22
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 22
p__Proteobacteria 1771
p__Proteobacteria;c__Gammaproteobacteria 1771
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 1660
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 1660
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 1660
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 1660
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 111
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 111
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 20
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_cloacae 20
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 91
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 18
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 73

  • QC

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  • Taxonomic profiling

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