Project

Run - SRR12647593

Project PRJNA663638
Sample SAMN16174942
Experiment SRX9128930
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,626.8 2,660.5
Mean read quality 40.9 40.5
Median read length 2,723.0 2,723.0
Median read quality 36.1 36.0
Number of reads 3,387.0 3,184.0
Read length N50 2,723.0 2,723.0
STDEV read length 323.4 134.7
Total bases 8,896,887.0 8,470,893.0
Before filtering After filtering(length/quality)
#Name SRR12647593_filt.fastq
p__Actinobacteriota 27
p__Actinobacteriota;c__Actinobacteria 27
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 11
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 11
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 11
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_breve 11
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 16
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 16
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 16
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 16
p__Firmicutes 202
p__Firmicutes;c__Bacilli 167
p__Firmicutes;c__Bacilli;o__Lactobacillales 166
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 166
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 166
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pasteurianus 160
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pyogenes 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_sp001556435 5
p__Firmicutes;c__Bacilli;o__Staphylococcales 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 1
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_hominis 1
p__Firmicutes;c__Clostridia 35
p__Firmicutes;c__Clostridia;o__Clostridiales 35
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 35
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 35
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 35
p__Proteobacteria 2945
p__Proteobacteria;c__Alphaproteobacteria 4
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales 4
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae 4
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium 4
p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium;s__Methylobacterium_sp003111705 4
p__Proteobacteria;c__Gammaproteobacteria 2941
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 2579
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 2579
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 2579
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 2579
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 360
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 360
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter 12
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;s__Citrobacter_braakii 12
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 347
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 347
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia;s__Leclercia_sp002902985 1
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 2
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae 2
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter 2
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter_johnsonii 2

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