Project

Run - SRR12647586

Project PRJNA663638
Sample SAMN16174948
Experiment SRX9128937
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,639.4 2,665.8
Mean read quality 41.9 41.7
Median read length 2,723.0 2,723.0
Median read quality 36.6 36.6
Number of reads 3,215.0 3,060.0
Read length N50 2,723.0 2,723.0
STDEV read length 299.2 119.8
Total bases 8,485,546.0 8,157,251.0
Before filtering After filtering(length/quality)
#Name SRR12647586_filt.fastq
p__Firmicutes 3
p__Firmicutes;c__Bacilli 1
p__Firmicutes;c__Bacilli;o__Lactobacillales 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Brochotrichaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Brochotrichaceae;g__Brochothrix 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Brochotrichaceae;g__Brochothrix;s__Brochothrix_thermosphacta 1
p__Firmicutes;c__Clostridia 1
p__Firmicutes;c__Clostridia;o__Clostridiales 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_paraputrificum 1
p__Firmicutes;c__Negativicutes 1
p__Firmicutes;c__Negativicutes;o__Veillonellales 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 1
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_rodentium 1
p__Proteobacteria 3050
p__Proteobacteria;c__Gammaproteobacteria 3050
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 2437
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 2437
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 2437
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 2437
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 613
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 613
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 212
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 211
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 394
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 388
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 5
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_variicola 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia 7
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia_proteamaculans 7

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  • Taxonomic profiling

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