Project

Run - SRR12647583

Project PRJNA663638
Sample SAMN16174951
Experiment SRX9128940
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,613.7 2,630.7
Mean read quality 42.4 42.0
Median read length 2,723.0 2,723.0
Median read quality 36.5 36.4
Number of reads 4,236.0 3,951.0
Read length N50 2,723.0 2,723.0
STDEV read length 397.7 155.2
Total bases 11,071,483.0 10,394,044.0
Before filtering After filtering(length/quality)
#Name SRR12647583_filt.fastq
p__Actinobacteriota 35
p__Actinobacteriota;c__Actinobacteria 35
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 14
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 14
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 14
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_breve 13
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_longum 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 11
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 11
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium 10
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_renale 10
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus 1
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus;s__Rhodococcus_erythropolis 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 10
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 10
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 10
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 10
p__Firmicutes 532
p__Firmicutes;c__Bacilli 103
p__Firmicutes;c__Bacilli;o__Lactobacillales 87
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 87
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 87
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_mitis 16
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_pasteurianus 71
p__Firmicutes;c__Bacilli;o__Staphylococcales 16
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella_haemolysans 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 11
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 11
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_capitis 11
p__Firmicutes;c__Clostridia 334
p__Firmicutes;c__Clostridia;o__Clostridiales 322
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 322
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 322
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_neonatale 134
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_perfringens 188
p__Firmicutes;c__Clostridia;o__Peptostreptococcales 12
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae 12
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides 12
p__Firmicutes;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides_difficile 12
p__Firmicutes;c__Negativicutes 95
p__Firmicutes;c__Negativicutes;o__Veillonellales 95
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 95
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 95
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_dispar 23
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 72
p__Proteobacteria 3365
p__Proteobacteria;c__Gammaproteobacteria 3365
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 2702
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 2702
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 2702
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 2702
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 653
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 653
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 219
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 213
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 6
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 434
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_grimontii 19
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 413
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 2
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 10
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae 10
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas 10
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_coleopterorum 1
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_rhizosphaerae 9

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