Project

Run - SRR12647615

Project PRJNA663638
Sample SAMN16174916
Experiment SRX9128908
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,648.8 2,684.4
Mean read quality 43.5 43.0
Median read length 2,723.0 2,723.0
Median read quality 36.8 36.7
Number of reads 4,002.0 3,774.0
Read length N50 2,723.0 2,723.0
STDEV read length 328.6 105.8
Total bases 10,600,578.0 10,130,876.0
Before filtering After filtering(length/quality)
#Name SRR12647615_filt.fastq
p__Actinobacteriota 3
p__Actinobacteriota;c__Actinobacteria 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Dermatophilaceae 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus 1
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus;s__Pedococcus_sp001426245 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 2
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 2
p__Firmicutes 43
p__Firmicutes;c__Clostridia 39
p__Firmicutes;c__Clostridia;o__Clostridiales 39
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 39
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 39
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_paraputrificum 39
p__Firmicutes;c__Negativicutes 4
p__Firmicutes;c__Negativicutes;o__Veillonellales 4
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 4
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 4
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 4
p__Proteobacteria 3719
p__Proteobacteria;c__Gammaproteobacteria 3719
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 3304
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 3304
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 3304
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_acidovorans 3
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 3301
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 415
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 415
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 415
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 415

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