Project

Run - SRR12647589

Project PRJNA663638
Sample SAMN16174919
Experiment SRX9128934
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,658.6 2,682.7
Mean read quality 41.2 41.0
Median read length 2,723.0 2,723.0
Median read quality 36.2 36.2
Number of reads 2,343.0 2,205.0
Read length N50 2,723.0 2,723.0
STDEV read length 333.7 109.3
Total bases 6,229,052.0 5,915,353.0
Before filtering After filtering(length/quality)
#Name SRR12647589_filt.fastq
p__Actinobacteriota 4
p__Actinobacteriota;c__Actinobacteria 4
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 4
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 4
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 4
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_granulosum 4
p__Firmicutes 71
p__Firmicutes;c__Bacilli 71
p__Firmicutes;c__Bacilli;o__Lactobacillales 7
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 7
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 7
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 7
p__Firmicutes;c__Bacilli;o__Staphylococcales 64
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 64
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 64
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 64
p__Proteobacteria 2124
p__Proteobacteria;c__Gammaproteobacteria 2124
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 1934
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 1934
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 1923
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 1923
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum;s__Herbaspirillum_aquaticum 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia 9
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia;s__Massilia_sp000745265 6
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia;s__Massilia_timonae 3
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhizobacter 1
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhizobacter;s__Rhizobacter_sp001425785 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 190
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 190
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 189
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 189
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 1

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