Project

Run - SRR12647579

Project PRJNA663638
Sample SAMN16174920
Experiment SRX9128944
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,474.0 2,519.9
Mean read quality 40.0 39.5
Median read length 2,432.0 2,443.0
Median read quality 35.0 34.9
Number of reads 4,962.0 4,589.0
Read length N50 2,463.0 2,505.0
STDEV read length 351.3 159.1
Total bases 12,276,049.0 11,563,969.0
Before filtering After filtering(length/quality)
#Name SRR12647579_filt.fastq
p__Actinobacteriota 1
p__Actinobacteriota;c__Actinobacteria 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 1
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 1
p__Firmicutes 243
p__Firmicutes;c__Bacilli 243
p__Firmicutes;c__Bacilli;o__Lactobacillales 238
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 237
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 237
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 237
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 1
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_sp001556435 1
p__Firmicutes;c__Bacilli;o__Staphylococcales 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 5
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_capitis 5
p__Proteobacteria 4327
p__Proteobacteria;c__Gammaproteobacteria 4327
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 1490
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 1490
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 1490
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 1490
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 2837
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 2837
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 2831
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_cloacae 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 2829
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_sp000493015 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 3
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella 3
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_michiganensis 1
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella_pneumoniae 2

  • QC

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  • Taxonomic profiling

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