Project

Run - SRR12647578

Project PRJNA663638
Sample SAMN16174921
Experiment SRX9128945
Instrument Platform PacBio SMRT
Instrument Model Sequel
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: AGRRTTYGATYHTDGYTYAG
Reverse primer: AGTACYRHRARGGAANGR
*The above primer pair produced products with a length of ~2700bp.
Before filtering After filtering(length/quality)
Mean read length 2,676.1 2,704.0
Mean read quality 42.6 42.2
Median read length 2,723.0 2,723.0
Median read quality 36.4 36.4
Number of reads 2,711.0 2,548.0
Read length N50 2,723.0 2,723.0
STDEV read length 360.3 79.9
Total bases 7,254,977.0 6,889,668.0
Before filtering After filtering(length/quality)
#Name SRR12647578_filt.fastq
p__Actinobacteriota 61
p__Actinobacteriota;c__Actinobacteria 61
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 14
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae 6
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia 6
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia_radingae 6
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae 5
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium 5
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium_maritypicum 5
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Micrococcaceae 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Micrococcaceae;g__Rothia 3
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia_aeria 3
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 14
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 14
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium 10
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_afermentans 3
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_sp001807205 7
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus 4
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus;s__Rhodococcus_fascians 4
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 33
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 33
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 33
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 33
p__Bacteroidota 3
p__Bacteroidota;c__Bacteroidia 3
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales 3
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae 3
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella 3
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella_disiens 3
p__Firmicutes 28
p__Firmicutes;c__Bacilli 21
p__Firmicutes;c__Bacilli;o__Lactobacillales 10
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus_faecalis 3
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 7
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 7
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_oralis 7
p__Firmicutes;c__Bacilli;o__Staphylococcales 11
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 11
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 11
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_capitis 6
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 5
p__Firmicutes;c__Clostridia 1
p__Firmicutes;c__Clostridia;o__Clostridiales 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 1
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_paraputrificum 1
p__Firmicutes;c__Negativicutes 6
p__Firmicutes;c__Negativicutes;o__Veillonellales 6
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae 6
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 6
p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella_parvula 6
p__Proteobacteria 2452
p__Proteobacteria;c__Gammaproteobacteria 2452
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 2395
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 2395
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia 2393
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Delftia;s__Delftia_tsuruhatensis 2393
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax 2
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax_sp900099805 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 41
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 41
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter 41
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter_himalayensis 41
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 16
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae 10
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella 10
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella_aerosaccus 10
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae 6
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas 6
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_rhizosphaerae 5
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_sp002966775 1

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  • Taxonomic profiling

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