Project

Run - DRR258828

Project PRJDB10841
Sample SAMD00260421
Experiment DRX248531
Instrument Platform Oxford Nanopore
Instrument Model MinION
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: CAGCMGCCGCGGTAA
Reverse primer: CCRAMCTGTCTCACGACG
Before filtering After filtering(length/quality)
Mean read length 3,679.6 3,929.7
Mean read quality 13.5 13.6
Median read length 3,867.0 3,899.0
Median read quality 13.9 13.9
Number of reads 47,728.0 41,851.0
Read length N50 3,892.0 3,906.0
STDEV read length 818.9 141.5
Total bases 175,622,064.0 164,463,159.0
Before filtering After filtering(length/quality)
#Name DRR258828.paf
p__Actinobacteriota 2280
p__Actinobacteriota;c__Actinobacteria 2280
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 1472
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 1472
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 1472
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_pseudocatenulatum 1472
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 733
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 733
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium 733
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_striatum 733
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 75
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 75
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 75
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 75
p__Bacteroidota 5666
p__Bacteroidota;c__Bacteroidia 5666
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales 5666
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae 1301
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides 1301
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides_uniformis 1301
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae 4365
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides 4365
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides_distasonis 4365
p__Firmicutes 24640
p__Firmicutes;c__Bacilli 20025
p__Firmicutes;c__Bacilli;o__Bacillales 7920
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae 7920
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus 7920
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_halotolerans 4
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_inaquosorum 6
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_subtilis 7903
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_vallismortis 7
p__Firmicutes;c__Bacilli;o__Lactobacillales 8959
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae 8013
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 8013
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_delbrueckii 8013
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 946
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 946
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_mutans 946
p__Firmicutes;c__Bacilli;o__Staphylococcales 3146
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 3146
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 3146
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_aureus 3
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 3143
p__Firmicutes;c__Clostridia 4615
p__Firmicutes;c__Clostridia;o__Clostridiales 4228
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 4228
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 4228
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_butyricum 4223
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_tyrobutyricum 5
p__Firmicutes;c__Clostridia;o__Lachnospirales 387
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae 387
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium 387
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium;s__Clostridium_clostridioforme 387
p__Proteobacteria 8112
p__Proteobacteria;c__Gammaproteobacteria 8112
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 701
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 701
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas 701
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas_terrigena 701
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 3866
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 3866
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 3866
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_coli 2
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 3864
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 3545
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae 1031
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter 1031
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter_radioresistens 1031
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae 2514
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas 2514
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_putida 2514

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  • Taxonomic profiling

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