Project

Run - DRR258830

Project PRJDB10841
Sample SAMD00260421
Experiment DRX248533
Instrument Platform Oxford Nanopore
Instrument Model MinION
Process Database : MIrROR_DB_r01; Pipeline : MIrROR.py(v0.1)
Note Forward primer: CAGCMGCCGCGGTAA
Reverse primer: CCRAMCTGTCTCACGACG
Before filtering After filtering(length/quality)
Mean read length 3,579.1 3,956.8
Mean read quality 13.5 13.6
Median read length 3,890.0 3,952.0
Median read quality 13.9 14.0
Number of reads 45,484.0 37,778.0
Read length N50 3,938.0 3,960.0
STDEV read length 974.3 152.6
Total bases 162,792,437.0 149,478,240.0
Before filtering After filtering(length/quality)
#Name DRR258830.paf
p__Actinobacteriota 2043
p__Actinobacteriota;c__Actinobacteria 2043
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales 1008
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae 1008
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium 1008
p__Actinobacteriota;c__Actinobacteria;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium_pseudocatenulatum 1008
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales 1016
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae 1016
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium 1016
p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium_striatum 1016
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales 19
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae 19
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium 19
p__Actinobacteriota;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium_acnes 19
p__Bacteroidota 5628
p__Bacteroidota;c__Bacteroidia 5628
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales 5628
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae 1461
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides 1461
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides_uniformis 1461
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae 4167
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides 4167
p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides_distasonis 4167
p__Firmicutes 20477
p__Firmicutes;c__Bacilli 15904
p__Firmicutes;c__Bacilli;o__Bacillales 6053
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae 6053
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus 6053
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_halotolerans 2
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_inaquosorum 4
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_marinus 1
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_subtilis 6045
p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus_vallismortis 1
p__Firmicutes;c__Bacilli;o__Lactobacillales 7368
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae 6314
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 6314
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus_delbrueckii 6314
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae 1054
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 1054
p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus_mutans 1054
p__Firmicutes;c__Bacilli;o__Staphylococcales 2483
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae 2483
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus 2483
p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus_epidermidis 2483
p__Firmicutes;c__Clostridia 4573
p__Firmicutes;c__Clostridia;o__Clostridiales 3521
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 3521
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium 3521
p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium_butyricum 3521
p__Firmicutes;c__Clostridia;o__Lachnospirales 1052
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae 1052
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium 1052
p__Firmicutes;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium;s__Clostridium_clostridioforme 1052
p__Proteobacteria 8756
p__Proteobacteria;c__Gammaproteobacteria 8756
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales 987
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae 987
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas 987
p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas_terrigena 987
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales 3785
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae 3785
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia 3785
p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia_flexneri 3785
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales 3984
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae 1555
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter 1555
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter_radioresistens 1555
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae 2429
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas 2429
p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas_putida 2429

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After zip

  • Taxonomic profiling

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